# scmcphub

> The natural Language Interface for single cell

## Docs

- [Build agent with MCP](https://docs.scmcphub.org/agent/mcp4agent.md): Build your own bioinformatics agents
- [Intelligent Tool Selection](https://docs.scmcphub.org/auto/auto.md): Intelligent Tool Selection (Experimental)
- [MCP configuration in AI client](https://docs.scmcphub.org/chat/config.md): Learn about how to configure MCP server in AI clients.
- [do analysis with natural language](https://docs.scmcphub.org/chat/mcp4chat.md): Enjoying your chatting
- [Backend Functions Reference](https://docs.scmcphub.org/dev-guide/backend-functions.md): Reference documentation for get_nbm and get_ads functions
- [BaseMCPManager Reference](https://docs.scmcphub.org/dev-guide/base-mcp-manager.md): Complete reference documentation for BaseMCPManager class
- [Code Mode](https://docs.scmcphub.org/dev-guide/code-mode.md): Code mode development guide for scmcphub
- [MCP server](https://docs.scmcphub.org/dev-guide/mcp-server.md): MCP server development guide for scmcphub
- [Tool Mode](https://docs.scmcphub.org/dev-guide/tool-mode.md): Tool Mode development guide
- [Installation](https://docs.scmcphub.org/getting-started/installation.md)
- [Run Mode](https://docs.scmcphub.org/getting-started/run-mode.md): Two scmcphub run modes for different use cases
- [Welcome to scmcphub!](https://docs.scmcphub.org/getting-started/welcome.md): The natural Language Interface for single cell
- [cellrank MCP Server Tools](https://docs.scmcphub.org/servers/cellrank-mcp.md)
- [decoupler MCP Server Tools](https://docs.scmcphub.org/servers/decoupler-mcp.md)
- [infercnv MCP Server Tools](https://docs.scmcphub.org/servers/infercnv-mcp.md)
- [liana MCP Server Tools](https://docs.scmcphub.org/servers/liana-mcp.md)
- [scanpy MCP Server Tools](https://docs.scmcphub.org/servers/scanpy-mcp.md)
- [scmcp Tools](https://docs.scmcphub.org/servers/scmcp.md)

## OpenAPI Specs

- [openapi](https://docs.scmcphub.org/api-reference/openapi.json)