> ## Documentation Index
> Fetch the complete documentation index at: https://docs.scmcphub.org/llms.txt
> Use this file to discover all available pages before exploring further.

# decoupler MCP Server Tools

Here is doc for decoupler-mcp, but you can refer to decoupler docs at [https://decoupler.readthedocs.io/en/latest/](https://decoupler.readthedocs.io/en/latest/)

## Inference Module

* `pathway_activity`: Infer pathway activities using PROGENy and MLM (Multi-Linear Model) method
* `tf_activity`: Infer transcription factor activities using CollecTRI and ULM (Univariate Linear Model) method