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Documentation Index

Fetch the complete documentation index at: https://docs.scmcphub.org/llms.txt

Use this file to discover all available pages before exploring further.

Here is doc for liana-mcp, but you can refer to liana docs at https://liana-py.readthedocs.io/

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Cell-Cell Communication Module

  • ls_ccc_method: List available cell-cell communication methods
  • communicate: Perform cell-cell communication analysis using various methods (cellphonedb, cellchat, connectome, natmi, etc.)
  • rank_aggregate: Get an aggregate of ligand-receptor scores from multiple cell-cell communication methods

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Plotting Module

  • circle_plot: Visualize cell-cell communication network using a circular plot
  • ccc_dotplot: Visualize cell-cell communication interactions using a dotplot